Tomáš Pluskal

All publications

Latest publications

Statistical analysis of feature-based molecular networking results from non-targeted metabolomics data

A. K. Pakkir Shah A. Walter F. Ottosson F. Russo M. Navarro-Diaz J. Boldt J. J. Kalinski E. E. Kontou J. Elofson A. Polyzois C. González-Marín S. Farrell M. R. Aggerbeck T. Pruksatrakul N. Chan Y. Wang M. Pöchhacker C. Brungs B. Cámara A. M. Caraballo-Rodriguez A. Cumsille F. de Oliveira K. Dührkop Y. El Abiead C. Geibel L. G. Graves M. Hansen S. Heuckeroth S. Knoblauch A. Kostenko M. C. M. Kuijpers K. Mildau S. Papadopoulos Lambidis P. W. Portal Gomes T. Schramm K. Steuer-Lodd P. Stincone S. Tayyab G. A. Vitale B. C. Wagner S. Xing M. T. Yazzie S. Zuffa M. de Kruijff C. Beemelmanns H. Link C. Mayer J. J. J. van der Hooft T. Damiani T. Pluskal P. Dorrestein J. Stanstrup R. Schmid M. Wang A. Aron M. Ernst D. Petras

Nature Protocols 2024: Early View

Reproducible mass spectrometry data processing and compound annotation in MZmine 3

S. Heuckeroth T. Damiani A. Smirnov O. Mokshyna C. Brungs A. Korf J. Smith P. Stincone L. Nothias T. Hyötyläinen M. Orešič U. Karst P. C. Dorrestein D. Petras X. Du J. J. J. van der Hooft R. Schmid T. Pluskal

Nature Protocols 19: 2597–2641 (2024)

Learning to design protein-protein interactions with enhanced generalization

A. Bushuiev R. Bushuiev P. Kouba A. Filkin M. Gabrielová M. Gabriel J. Sedlář T. Pluskal J. Damborský S. Mazurenko J. Šivic

12th International Conference on Learning Representations (ICLR), May 7-11, 2024 in Vienna, 1-26, ICLR (2024)

Revealing data leakage in protein interaction benchmarks

A. Bushuiev R. Bushuiev J. Sedlář T. Pluskal J. Damborský S. Mazurenko J. Šivic

12th International Conference on Learning Representations (ICLR), May 7-11, 2024 in Vienna, 1-13, ICLR (2024)